Accéder directement au contenu Accéder directement à la navigation
Chapitre d'ouvrage

Membrane-associated proteins and peptides

Abstract : This chapter discusses the practical aspects of setting up molecular dynamics simulations of membrane-associated proteins and peptides, and the analysis thereof. Topology files for selected lipids are provided and selected analysis tools presented. These include tools for the creation of lipid bilayers of mixed lipid content (DOPE) and easy extraction of lipid coordinates (g_zcoor, g_xycoor), the calculation of helical axes (g_helixaxis) and aromatic order parameters (g_arom), the determination of peptide- or protein-interacting lipids (g_under), and the investigation of lipid-specific interactions through the calculation of lipid-bridged residue-residue contacts (g_prolip).
Type de document :
Chapitre d'ouvrage
Liste complète des métadonnées
Contributeur : Lilloa Université de Lille <>
Soumis le : jeudi 15 juillet 2021 - 08:53:24
Dernière modification le : vendredi 16 juillet 2021 - 03:38:29




Marc Lensink. Membrane-associated proteins and peptides. Kukol, Andreas. Molecular Modeling of Proteins, Humana Press, pp.109-124, 2015, 978-1-4939-1465-4. ⟨10.1007/978-1-4939-1465-4_6⟩. ⟨hal-03286648⟩



Consultations de la notice