Membrane-associated proteins and peptides - Université de Lille Accéder directement au contenu
Chapitre D'ouvrage Année : 2015

Membrane-associated proteins and peptides

Résumé

This chapter discusses the practical aspects of setting up molecular dynamics simulations of membrane-associated proteins and peptides, and the analysis thereof. Topology files for selected lipids are provided and selected analysis tools presented. These include tools for the creation of lipid bilayers of mixed lipid content (DOPE) and easy extraction of lipid coordinates (g_zcoor, g_xycoor), the calculation of helical axes (g_helixaxis) and aromatic order parameters (g_arom), the determination of peptide- or protein-interacting lipids (g_under), and the investigation of lipid-specific interactions through the calculation of lipid-bridged residue-residue contacts (g_prolip).
Fichier non déposé

Dates et versions

hal-03286648 , version 1 (15-07-2021)

Identifiants

Citer

Marc Lensink. Membrane-associated proteins and peptides. Kukol, Andreas. Molecular Modeling of Proteins, Humana Press, pp.109-124, 2015, 978-1-4939-1465-4. ⟨10.1007/978-1-4939-1465-4_6⟩. ⟨hal-03286648⟩

Collections

CNRS UNIV-LILLE
18 Consultations
0 Téléchargements

Altmetric

Partager

Gmail Mastodon Facebook X LinkedIn More